Junior Scientific Assistant Syllabus 516/2021 KPSC

PART I : CHEMISTRY ( 25 Marks)
1. Atomic structure and Chemical bonding
Bohr’s atom model , Heisenberg’s uncertainty principle, Schrodinger wave
equation , Wave function, Shapes of orbitals, various rules for adding electrons to
different orbitals, Ionic bond, Covalent bond, Metallic bond, Coordinate bond and
Weak chemical forces (2 marks)
2. Periodic table
Classification of elements- Periods and groups, Ionisation energy, Electron affinity,
Electronegativity – Variation of these properties along a group and a period.
(2 marks)
3. Analytical Chemistry
Titrametric, gravimetric and colorimetric analysis, Errors- Types of errors, accuracy
and precision.
Spectroscopic methods- UV-Visible, IR, NMR, and Mass spectroscopy.
Separation techniques- Solvent extraction, Extraction of metal ions and organic
species from aqueous solutions, the principle of Chromatography
Instrumental techniques- Principle and application of Thermogravimetric analysis
and Differential thermal analysis (5 marks)
4. Colloids and Surface chemistry
Colloids- Classification, Mechanical, Electrical, and Electrokinetic properties of
colloids, Surfactants, Micelle formation, Emulsification
Adsorption- Applications, adsorption isotherms- Freundlich, Langmuir and BET
theory. (3 marks)
5. Green chemistry
Need of green chemistry, Principles of green chemistry, Green solvents, Microwave-assisted reactions, and ultrasound-assisted reactions
(3 marks)
6. Environmental Chemistry
Atmospheric structure and composition, Toxic chemicals in environment, Sources
and treatment of heavy metal poisoning,
Air pollution –Air pollutants, Greenhouse effect, Global warming, Ozone depletion,
control of air pollution
Soil pollution- Soil formation, soil acidification, liming of soil, Industrial and urban
wastes
Water pollution- Sources, Eutrophication, BOD, COD, Hardness of water, Domestic
water treatment, Sewage treatment.
Noise and radiation pollution- Noise – general features, control of noise pollution.
Biological effects of radiation, Radioactive waste management
Chemical toxicology- Toxic chemicals in the environment, Effects of toxic
chemicals, Pesticides, and its biochemical effects. (10 marks)

PART II: MICROBIOLOGY (25 Marks)

Techniques in Microbiology (Marks 5)
Microscopy, types of microscopes, advanced techniques in microscopy. Staining techniques- simple,
negative, Grams, spore, flagella, acid fast, volutin, capsule and Feulgen staining. Sterilisation and
disinfection techniques- Physical and chemical methods- flaming, boiling, autoclaving, inspissation,
Heat, Filtration, Radiation. Calorimetry and spectrophotometry, Electrophoretic techniques for
proteins and nucleic acids, PCR. Chromatography techniques: adsorption, partition, ion exchange,
gel filtration, HPLC, FPLC. Techniques used for identification of microorganisms – biotyping,
serotyping, molecular techniques.
General Microbiology and Microbial Physiology (5 Marks)
Comparison of eukaryotes and prokaryote. Archaebacteria and eubacteria. Bacterial forms and
arrangement of cells. Actinomycetes, Mold and yeast forms. Viral and bacteriophage forms.
Ultrastructure of bacteria. Effect of antibiotics on microbial cells. Structure, function and chemical
composition of cell wall and cell membrane. Endospore: Structure, formation, stages of sporulation.
Effect of various parameters and Environmental factors on microbial growth. Bacteria classification
based on specific requirements-based on temperature, pH, O2 and solute concentration. Nutritional
requirements of bacteria. Nutritional types of bacteria. Modes of bacterial nutrition. Transport of
nutrients by bacteria. Solid and liquid media, use of agar. Different types of culture media. Culturing
methods-Streak, spread, pour plate methods, stab culture and lawn culture. Cultivation of aerobic
and anaerobic bacteria. Culture preservation strategies. Growth curve and its significance. Viral
growth- lytic and lysogenic stage. Viral cultivation methods. Viral and bacteriophage quantitation
methods.
Environmental Microbiology (5 Mark)
Soil Microbiology – Types of soil microbes, role of microorganisms in soil fertility; Factors
affecting microbial population – moisture, pH, temperature, organic matter, agronomic practices etc.
Aquatic Microbiology: Aquatic environment, distribution of microorganisms in aquatic
environment. Factors influencing their growth and distribution. Water Purification procedures for
public water supplies, Concept of indicator organisms, Microbiological examination of water. BOD,
COD, Wastewater treatment steps and methods. Eutrophication and algal bloom. Brief account of
water borne diseases and transmission. Aerobiology – atmospheric layers, organisms in air,
distribution and sources. Disease forecasting in plants. Indoor and outdoor air. Droplet nuclei,
aerosol, infectious dust. Microbiological sampling of air. Air borne transmission of harmful
microbes and air borne infections. Biogeochemical cycle- Role of microorganisms in Carbon,
Phosphorous, Nitrogen and sulphur cycles. Microbe-Microbe Interactions. Mutualism, Synergism,
Commensalism, Competition, Amensalism, Parasitism, Predation.
Waste management and Xenobiotic metabolism (5 Marks)
Solid waste management- Sources and types of solid waste, need for management, Landfills,
composting, vermicomposting, anaerobic digesters, and production of biogas. Design and
management of biogas plants. Xenobiotic metabolism – Novel pollutants, persistence and
biomagnification. Recalcitrant halocarbons- nitroaromatic compounds, PCB, alkyl benzene
sulphonates, and petroleum hydrocarbons – their biodegradation. Bioremediation of polluted
environment. Oil spills, heavy Metals and other xenobiotics. Microbial leaching and corrosion of
metals.
Food Microbiology (5 Marks)
Food as a substrate for microorganisms. Types of microorganisms in food. Source of contamination.
Factors influencing microbial growth in foods. Physical and chemical properties of milk. Milk as a
substrate for microorganisms. Types of microorganisms in Milk- bacteria, fungi and yeast. Sources
of microbial contamination of milk. Microbiological analysis of milk. Food fermentations: Cheese,
bread, yoghurt, idli, fermented pickles and fermented vegetables, Ice cream, – methods and
organisms used. SCP, Probiotics and prebiotics. General principles underlying spoilage, spoilage of
different kinds of foods. Principles of food preservation. Physical and chemical methods of
preservation. Food Sanitation, good manufacturing practices, HACCP and personnel hygiene.

PART III : BIOTECHNOLOGY ( 25 Marks)

Module I- Biophysics and Principle of Instrumentation (3 MARKS)
Principles of thermodynamics:
Laws of conservation of energy- first and second laws and its relevance in the
biological system, entropy and enthalpy, Gibbs free energy, bioenergeticsendothermic and exothermic reactions of biological systems, energy change in the
biochemical reactions, sources of heat limits to temperature, heat dissipation and
conservation.
Colorimetry and Spectrophotometry: Beer-Lambert’s law, visible absorption
spectrum, molar extinction coefficient, colorimeter, spectrophotometer, fluorescence,
phosphorescence.
Centrifugation: Principle of sedimentation technique, different types of centrifuge
and rotors, principle and procedure and application of differential centrifugation,
density gradient centrifugation, ultra centrifugation rate zonal centrifugation,
Isopycnic centrifugation
pH meter: Principle and working.
Brief account of densitometry, fluorimetry, manometry, polarography, atomic
absorption spectroscopy, IR, NMR and X-ray crystallography and Mass spectrometry.
Electrophoresis: Principle, procedure and application of zone electrophoresis-, paper
electrophoresis, gel electrophoresis (native PAGE, SDS-PAGE).
Isotopes and radioisotopes:
Isotopes and radioisotopes, radiations- ionizing radiations, Application of isotopes
and radioisotopes in biological research, radioisotope tracer technique and
autoradiography.
Module II Biochemistry & Enzymology ( 2 MARKS)
Normality, molality, molarity, percentage solution, mole fraction, parts per million,
simple numerical problems from the above, fundamental principles of diffusion,
osmosis, osmotic pressure, carbohydrates, lipids, aminoacids, proteins, nucleic acids
– their detection methods, Enzymes- Classification and nomenclature, enzyme
activation, enzyme inhibition- competitive and non-competitive, allosteric regulation,
purification of enzymes, coenzymes.
Module III Microbiology (3 MARKS)
Bacteria, virus, fungi, protozoa, mycoplasma, concept of microbial species, strains;
microbial cell surfaces, Gram positive and Gram negative bacteria, Motility in
bacteria, kinds of flagella, nutritional classification of bacteria.
Viruses:Viruses, phage culture, Bacteriophage, DNA and RNA phages, T4 phage,
Llytic and
lysogenic cycles, host cell adsorption and penetration, synthesis phage nucleic acid.
Microbes in extreme environments
Thermophiles and alkalophiles, pathogenic microorganisms- bacteria, fungi, viruses,
protozoans and mycoplasma, defense mechanism against microorganisms, symbiosis
and antibiosis among microbial population, nitrogène fixing bacteria in agriculture
and forestry, photosynthetic bacteria, Role of bacteria in carbon, nitrogen, sulphur and
phosphorous cycle in nature.
Bacterial nutrition
Culture media – requirements of bacterial culture media, types and uses, Bacterial
growth curve, microbial metabolism, fermentation, different types of fermentation,
methanogenic bacteria.
Isolation of pure culture: Spread plate, streak plate, pour plate etc., synthetic media,
simple and complex media. Isolation of anaerobes and its culture techniques, slant
culture and stab culture.
Industrial microbes and their uses
Production of food (dairy and SCP) and drugs (antibiotics such as penicillin &
streptomycin), products of fermentation, Strain improvement by enrichment mutation
and recombinant DNA technique, production of heterologous proteins of interest in
microorganisms.
Control of microorganisms
Physical agents, chemical agents, antibiotics and other therapeutic agents
Bacterial cell structure and Growth – Eukaryotic cells and prokaryotic cells,
Glycocalyx, bacterial cell membranes, bacterial cell wall, cytoplasm, spores, organs
of locomotion, chemotaxis in bacteria, ribosomes in bacteria, bacterial nucleus and
chromosomes, bacterial nucleoid. Bacterial Growth curve, Measurement of growth,
factors affecting growth of bacteria.
Nutrition in bacteria-classification based on nutrition- autotrophic and heterotrophic
organisms, Photosynthetic and chemosynthetic organisms- purple sulfur bacteria,
Saprophytes and parasites-pathogenic parasites.
Nitrogen Metabolism- Biological nitrogen fixation, symbiotic nitrogen fixation,
components involved in the process of nitrogen fixation, Inorganic nitrogen
metabolism, assimilation of inorganic nitrogen, Nitrogen cycle.
Energy production in bacteria- Energy and ATP, aerobic respiration, Glycolysis and
tricarboxylic acid cycle, Electron transport and oxidative phosphorylation in Bacteria,
catabolism of other carbohydrates.Photosynthesis in bacteria
Anaerobic respiration- Fermentation, alcohol fermentation by yeasts and bacteria,
lactic acid fermentation, Methnogenic bacteria, Acetobacter and acetic acid
fermentation.
Application of bacterial metabolism in industry and agriculture, economically
important bacteria – lactic acid bacteria, nitrogen fixing bacteria etc.
Lichens, mycorrhizae, pollution indicators etc.
Microbial Diseases of Humans
Airborne bacterial diseases – streptococcal; diseases, tuberculosis, Pneumococcal
Pneumonia, Klebsiella Pneumonia,
Foodborne and waterborne bacterial diseases- Foodborne and waterborne
intoxications-Botulism, Staphylococcal food poisoning;
Foodborne and waterborne infections- Typhoid fever, salmonellosis, Cholera,
Shigellosis, E.coli Diarrheas, Brucellosis
Soilborne bacterial diseases- Anthrax, Tetanus, Leptospirosis,
Viral diseases of Humans- Pneumotropic viral diseases-Influenza, Adenoviral
infections,
Rhinoviral infections,
Dermatoviral diseases- Herpes simplex, chickenpox, Measles, Rubella,
Viscerotropic Viral diseases- yellow fever, Dengue fever,
Neurotropic viral diseases- rabies, Polio
Module IV Molecular Biology ( 2 Marks)
Introduction
DNA, replication of DNA, RNA, Types of RNA. Transcription, translation,
transcriptional and translational modifications, ORF, Eukaryotic and prokaryotic
differences in the genetic makeup and processing, genes, transposons, mutations and
repair of nucleic acids,
Transfer of genetic information in bacteria, Bacterial chromosomes- DNA, Plasmids,
different types of plasmids- non-conjugative, mobilizable plasmids, resistance
plasmids
Bacterial recombination:Conjugation- Fertility factors, F+ and F- cells, F pili, High
frequency recombination, Transformation- Griffith’s effect, evidence of DNA as
genetic material, , Transduction- general characteristics of bacteriophages, Lambda
pahage-general structure, general multiplication in bacteria- lytic phase and lysogenic
phase, bacterial recombination through transduction, Phages and plasmids as vectors
for genetic engineering, Bacterial recombination and transferable drug resistance
Module V Immunology & Immunotechnology ( 2 Marks)
The Human Immune System: Organs and cells of immune system
Immune system and immunity, innate and specific or acquired immunity,
Immune system- organs, tissues and cells involved in immunity, Humoral immunity
and cell mediated immunity, antigens, antibodies, immunogens,
haptens.Immunoglobulins, structure and functions, Antibody-antigen interaction,
antigen-antibody reactions, agglutination, immuno-diffusion, immunoelectrophoresis, ELISA, RIE, production of polyclonal and monoclonal antibodies,
hybridoma technolog, Immunity to infections of diseases: vaccines – attenuated and
recombinant vaccines, vaccination.therapeutic antibodies
Autoimmunity and autoimmune diseases: Hashimoto’s thyroiditis; Myasthenia gravis;
Rheumatoid Arthritis, Pernicious anemia, Asthma.
Module VI Recombinant DNA Technology ( 3 Marks)
Tools of recombinant DNA technologyRestriction endonucleases, classification and general characteristics of endonucleases;
Other enzymes used in the recombinant DNA technique- DNA ligase, alkaline
phosphatase;
Vectors, the vehicle for cloning: special features needed for a vector, Various types of
cloning vectors- plasmid cloning vectors- pBR322, Expression vectors, the pUC
series,Bacteriophage cloning vectors -phage cloning vectors, M13 based vectors,
Phagemids and Cosmid vectors, Artificial Chromosomes: Yeast Artificial vectors
(YACs), Bacterial artificial Vectors (BACs), Application for YAC and BAC,- genome
sequencing
Shuttle vectors for animals and plants, mammalian vectors; Gene Therapy- Vectors
for gene therapy.
Construction of recombinant DNA, host cells, competent cells, bacterial
transformation, screening methods of transformed cells, Various methods of genetic
transformation in eukaryotes- Direct gene transfer and vector mediated gene transfer,
Screening methods of transformed cells and organisms.
Molecular hybridization techniques for genome analysis Genome analysis: RFLP,
AFLP, RAPD, Southern hybridization PCR: Principle and applications, Nucleic acid
sequencing: Principle and applications, Genome sequencing methods, Human
genome project– a brief account.Gene expression analysis – Northern hybridization
and microarrays. Transgenic organisms and its impact in agriculture, Medicine and
Environment, Biosafety and Ethics in Genetic Engineering.
Module VII Industrial and Food Biotechnology ( 3 Marks)
Industrial Microbiology
Microbes in industry- Industrially important microorganisms, screening and isolation,
industrially important enzymes and chemicals, Industrial production of enzymes and
chemicals, Microbial production of antibiotics, vitamins, amino acids and other
organic acids
Fermentation
The biological process of fermentation- various types of fermentation, alcohol
fermentation, Respiration vs Fermentation – Important products of fermentation.
Fermentation as an industry, selection of industrial microorganisms for specific
products and reactions,
Laboratory scale biological process- scale up of biological reactions in to bioprocess;
Bioreactors-types of bioreactors / Fermentors, Bioreactors for bacteria and yeast cells,
Fermentors for plant cell cultures and animal cell cultures,
Microbes of food and fermented food- Curd, wheat and rice flour, Meat and fish,
Poultry and Eggs, Breads and bakery products, Grains, Microorganism in food
spoilage, types of spoilage, canning, microbes in the spoilage of canned foods,
principles of preservation of foods, Hazardous effect of food spoilage, mycotoxins;
Industrial production of antibiotics (penicillin & streptomycin) and organic acids
(acetic acid & Citric acids)
Microorganisms as food and food supplements – fermented food, microalgae- Single
cell protein, Edible mushrooms. Microbes in dairy industry, dairy products; microbial
processing of foods- enzymes in food processing.
Agricultural waste and food industry wastes as the substrate for fermentation, solid
state fermentation; production of single cell proteins, microbial production of
enzymes;
Module VIII Environmental Biotechnology ( 3 Marks)
Ecosystem, Biodiversity, Types of ecosystem and biosphere;
Pollution: sources of pollution, Greenhouse effect, general characteristics of
domestic wastes, community wastes, agricultural wastes, effect of solid waste in the
environment
Types of pollution, Organic load in aquatic systems, BOD and COD, microbial
quality of water, drinks and food Use of biotechnology in the treatment of municipal
wastes and hazardous industrial effluents
Bioremediation: Microbial degradation of pesticides, herbicides and other toxic
chemicals in the environment, Biological control of pests and insects, BiopesticidesBacillus thuringiensis, bioherbicides; Plants used in metal remediation, plants and
algae used in phytoremediation and their mechanisms
Application of biotechnology in the production of biofertilizers and nitrogen fixation
– nitrogen fixing microorganisms, mycorrhiza
Renewable and non-renewable energy resources: conventional fuels and their
environmental impacts (fire word, animal oils, coal, petroleum)
Non-conventionnel Energy Sources
Biomass: utilization of biomass as energy source– application of microbes in
production of fuels from biomass- biogas and methanogenic bacteria, microbial
hydrogen production, production of methanol, ethanol and other types of chemicals
from biomass and agricultural wastes, the gasohol experiment
Solar energy converter, hopes from photosynthetic pigments, vegetable oils as engine
fuels, energy crops-jojoba;
Possibility of plant-based petroleum industry and cellulose degradation for
combustible fuels
Bioleaching
Enrichment of ores by microorganisms (bioaccumulation and biomineralization);
Bio-assessment of environmental quality.
Module IX Plant and Animal Biotechnology (3 Marks)
Plant tissue culture
Fundamental principles of in vitro plant cultures: use of plant growth regulators,
composition of tissue culture media- media components and its functions.Types of in
vitro cultures
Callus cultures, cell suspension cultures, organ cultures- root cultures, hairy root
cultures, embryo cultures, anther culture ; their applications,
Genetic engineering of plants
Methods of gene transfer in plants –Physical, chemical and biological methods
Agrobacterium tumefaciens, tumor formation in plants by A. tumefaciens, application
of A. tumefaciens in plant genetic engineering, Virus mediated gene transfer in plants.
Transgenic plants
Transgenic crops, Impact of transgenic plants in agriculture and Horticulture, NonAgricultural applications of transgenic plants- Biopharming- production of
therapeutic proteins in transgenic plants, edible vaccines, disease resistant, salt
tolerant, pest resistant and stress tolerant crop and medicinal plants, Metabolic
engineering of plants for enhanced and controlled production of plant products.
Application of Animal Cell Cultures
Uses of animal cell cultures, Products of animal cell cultures- hormones (insulin,
growth hormones), interferon,t-plasminogen activator, factorVIII, Factor IX and virus
cultivation;
Expression of cloned proteins in animal cells, production of vaccines in animal cells,
production of polyclonal and monoclonal antibodies-hybridoma technology
Transgenic animals and its practical uses
Module X Bioinformatics (1 Mark)
Databases-various types of databases, Biological Databases- Importance of databases
in biotechnology, NCBI, Gene bank, PubMed. Etc.
Genomics and Proteomics-Definitions, Application of Proteomics and genomics in
Biotechnology.

PART IV : Environmental Science (25 Marks)

Module 1 (5 marks)
Dissociation of water, ionic product of water, concept of pH and pOH, types of
acids, bases, buffers and electrolytes. Dissociation of weak acids and
electrolytes. Meaning pKa values, buffers and mechanism of action.
Handerson Hassel’s baach equation. Molecular interactions. Non covalent
interactions and covalent interactions with examples. Meaning of normality,
molality and molarity. Percentage solutions and mole fractions. Simple
numerical values from the above. Principles of diffusion and osmosis,
definition of osmotic pressure. Influence of ionization and molecular size on
osmotic pressure. Isotonic, hypertonic and hypotonic solutions- definition and
examples. Meaning of true solutions, colloidal solution and coarse suspension.
The distinction between lyophilic and lyophobic salts with examples.
Elementary study of charge on colloids, Tyndall effect. Emulsions and
emulsifying agents and examples. Reverse osmosis and its applications.
Module 2 (5 marks)
Biomolecules-carbohydrates, lipids, proteins, nucleic acids, aminoacids, fatty
acids, nucleotides classification with examples. Basic structure of proteins,
carbohydrates and nucleic acids. Enzymes-properties, factors affecting its
action, basic mechanism of action. Name of methods for the detection of
carbohydrates, amino acids and proteins in a solution. Denaturation of proteins
and DNA. Precipitation reactions of proteins.
Polymers. Natural polymers, semisynthetic polymers, synthetic polymers,
definition and examples. Examples for addition polymers, condensation
polymers, elastomers, thermoplastic polymers, thermo setting polymers.
Difference between natural and synthetic rubber. Biodegradable polymers.
Module 3 (5 marks)
Methods of microbial control. Physical and chemical methods with examples
and their mechanism of action. Preparation of different culture media.
Preparation of slants, butts and plates. Inoculation techniques and study of
growth. Use of differential and selective media with examples. Identification
of gram positive and negative bacteria. Microbiological analysis of water
purity, indicator organisms, ground water quality and home treatment systems.
Distribution and sources of air borne organisms. Droplet and droplet nuclei.
Examples of water borne and food borne microbial diseases. Food adulterants,
artificial sweeteners, artificial colours, artificial flavours. Common microbial
toxins and fungal toxins in stale food.
Module 4 (5 marks)
Air pollutants. Gaseous air pollutants, oxides of sulphur, oxides of nitrogen,
hydrocarbons, oxides of carbon, carbon monoxide, carbon dioxide, their sources
and health effects. Particulate air pollutants. Smoke, dust, mist, fumes and their
sources. Smog, classical and photochemical smog with examples and their
effects and control measures. Global warming and green house effect, acid rain,
ozone hole. Assessment of air quality, air sanitation. Examples of air borne
microbial diseases. Water pollution- Organic wastes, in water, chemical
pollutants, heavy metal pollutants. Water analysis for chemical detection.
Eutrophication. Soil pollution-Pesticides and its types, herbicides and its types,
industrial wastes, biodegradable and non biodegradable, with examples.
Radioactive wastes-sources and management. Measurement of the level of
pollution- Chemical oxygen demand. Suspended solids. Biological oxygen
demand. Ammoniacal nitrogen content and biological indicators. Biological
magnification. Sources and effects of noise pollution. Noise standards.
Environmental education, major conservation efforts of World Wildlife Fund,
International Union for Conservation of Nature (IUCN), United Nations
Environment Programme (UNEP), Convention on International Trade in
Endangered Species of Wild Fauna and Flora (CITES) and Environmental
Information System (ENVIS).
Module 5 (5 marks)
Microscopy- basic principle and technique of compound and electron
microscope. Principle, basic technique and uses of photoelectric colorimeter and
spectrophotometer. Basic techniques and application of chromatography, paper,
thin layer, gel, gas liquid, high pressure liquid chromatography. Principle and
basic technique of electrophoresis like gel electrophoresis and poly acrylamide
electrophoresis. Basic technique of recombinant DNA technology and its
applications. Basics of blotting techniques and its application. Basic principles
of PCR and its applications. Measurement of radioactivity- Geiger- Muller and
Scintillation counters, autoradiography and its applications. Biotechnological
management of solid and liquid wastes. Uses of immobilized enzymes with
examples.